ugtm
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Overview
Installation
eGTM: GTM transformer
eGTC: GTM classifier
eGTR: GTM regressor
API reference
API Reference
Examples
Visualization examples
Classification examples
Regression examples
Advanced functions
tutorial
Glossary
Glossary
References
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ugtm
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Index
A
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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O
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P
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R
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T
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U
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W
A
advancedGTC() (in module ugtm.ugtm_predictions)
advancedPredictBayes() (in module ugtm.ugtm_predictions)
C
chooseKernel() (in module ugtm.ugtm_preprocess)
ClassMap (class in ugtm.ugtm_landscape)
classMap() (in module ugtm.ugtm_landscape)
computelogLikelihood() (in module ugtm.ugtm_core)
computeWidth() (in module ugtm.ugtm_core)
createDistanceMatrix() (in module ugtm.ugtm_core)
createGMatrix() (in module ugtm.ugtm_core)
createPhiMatrix() (in module ugtm.ugtm_core)
createPMatrix() (in module ugtm.ugtm_core)
createRMatrix() (in module ugtm.ugtm_core)
createWMatrix() (in module ugtm.ugtm_core)
createYMatrix() (in module ugtm.ugtm_core)
createYMatrixInit() (in module ugtm.ugtm_core)
crossvalidateGTC() (in module ugtm.ugtm_crossvalidate)
crossvalidateGTR() (in module ugtm.ugtm_crossvalidate)
crossvalidatePCAC() (in module ugtm.ugtm_crossvalidate)
crossvalidatePCAR() (in module ugtm.ugtm_crossvalidate)
crossvalidateSVC() (in module ugtm.ugtm_crossvalidate)
crossvalidateSVCrbf() (in module ugtm.ugtm_crossvalidate)
crossvalidateSVR() (in module ugtm.ugtm_crossvalidate)
D
default() (ugtm.ugtm_plot.NumpyEncoder method)
E
eGTC (class in ugtm.ugtm_sklearn)
eGTCnn (class in ugtm.ugtm_sklearn)
eGTM (class in ugtm.ugtm_sklearn)
eGTR (class in ugtm.ugtm_sklearn)
evalBetaInv() (in module ugtm.ugtm_core)
exp_normalize() (in module ugtm.ugtm_core)
F
fit() (ugtm.ugtm_sklearn.eGTC method)
(ugtm.ugtm_sklearn.eGTCnn method)
(ugtm.ugtm_sklearn.eGTM method)
(ugtm.ugtm_sklearn.eGTR method)
fit_transform() (ugtm.ugtm_sklearn.eGTM method)
G
GTC() (in module ugtm.ugtm_predictions)
GTR() (in module ugtm.ugtm_predictions)
I
initBetaInvRandom() (in module ugtm.ugtm_core)
InitialGTM (class in ugtm.ugtm_classes)
initialize() (in module ugtm.ugtm_gtm)
initializeKernel() (in module ugtm.ugtm_kgtm)
inverse_transform() (ugtm.ugtm_sklearn.eGTM method)
K
KERNELcreateDistanceMatrix() (in module ugtm.ugtm_core)
L
landscape() (in module ugtm.ugtm_landscape)
M
meanPoint() (in module ugtm.ugtm_core)
modePoint() (in module ugtm.ugtm_core)
N
NumpyEncoder (class in ugtm.ugtm_plot)
O
optimBetaInv() (in module ugtm.ugtm_core)
optimize() (in module ugtm.ugtm_gtm)
OptimizedGTM (class in ugtm.ugtm_classes)
optimizeKernel() (in module ugtm.ugtm_kgtm)
optimLMatrix() (in module ugtm.ugtm_core)
optimWMatrix() (in module ugtm.ugtm_core)
P
pcaPreprocess() (in module ugtm.ugtm_preprocess)
plot() (in module ugtm.ugtm_plot)
(ugtm.ugtm_classes.OptimizedGTM method)
plot_html() (in module ugtm.ugtm_plot)
(ugtm.ugtm_classes.OptimizedGTM method)
plot_html_GTM() (in module ugtm.ugtm_plot)
plot_html_GTM_projection() (in module ugtm.ugtm_plot)
plot_html_projection() (ugtm.ugtm_classes.OptimizedGTM method)
plot_modes() (ugtm.ugtm_classes.OptimizedGTM method)
plot_multipanel() (ugtm.ugtm_classes.OptimizedGTM method)
plot_pdf() (in module ugtm.ugtm_plot)
plotClassMap() (in module ugtm.ugtm_plot)
plotClassMapNoPoints() (in module ugtm.ugtm_plot)
plotLandscape() (in module ugtm.ugtm_plot)
plotLandscapeNoPoints() (in module ugtm.ugtm_plot)
plotMultiPanelGTM() (in module ugtm.ugtm_plot)
predict() (ugtm.ugtm_sklearn.eGTC method)
(ugtm.ugtm_sklearn.eGTCnn method)
(ugtm.ugtm_sklearn.eGTR method)
predictBayes() (in module ugtm.ugtm_predictions)
predictNN() (in module ugtm.ugtm_predictions)
predictNNSimple() (in module ugtm.ugtm_predictions)
printClassPredictions() (in module ugtm.ugtm_predictions)
ProcessedTrainTest (class in ugtm.ugtm_preprocess)
processTrainTest() (in module ugtm.ugtm_preprocess)
projection() (in module ugtm.ugtm_gtm)
R
ReturnU (class in ugtm.ugtm_classes)
runGTM() (in module ugtm.ugtm_gtm)
runkGTM() (in module ugtm.ugtm_kgtm)
T
transform() (in module ugtm.ugtm_gtm)
(ugtm.ugtm_sklearn.eGTM method)
U
ugtm (module)
,
[1]
ugtm.ugtm_classes (module)
,
[1]
,
[2]
ugtm.ugtm_core (module)
ugtm.ugtm_crossvalidate (module)
,
[1]
,
[2]
ugtm.ugtm_gtm (module)
,
[1]
,
[2]
ugtm.ugtm_kgtm (module)
,
[1]
,
[2]
ugtm.ugtm_landscape (module)
,
[1]
,
[2]
ugtm.ugtm_plot (module)
,
[1]
,
[2]
ugtm.ugtm_predictions (module)
,
[1]
,
[2]
ugtm.ugtm_preprocess (module)
,
[1]
,
[2]
ugtm.ugtm_sklearn (module)
,
[1]
,
[2]
W
whichExperiment() (in module ugtm.ugtm_crossvalidate)
write() (ugtm.ugtm_classes.OptimizedGTM method)
write_all() (ugtm.ugtm_classes.OptimizedGTM method)
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