Index

A

advancedGTC() (in module ugtm.ugtm_predictions)

advancedPredictBayes() (in module ugtm.ugtm_predictions)

C

chooseKernel() (in module ugtm.ugtm_preprocess) ClassMap (class in ugtm.ugtm_landscape) classMap() (in module ugtm.ugtm_landscape) computelogLikelihood() (in module ugtm.ugtm_core) computeWidth() (in module ugtm.ugtm_core) createDistanceMatrix() (in module ugtm.ugtm_core) createGMatrix() (in module ugtm.ugtm_core) createPhiMatrix() (in module ugtm.ugtm_core) createPMatrix() (in module ugtm.ugtm_core) createRMatrix() (in module ugtm.ugtm_core)

createWMatrix() (in module ugtm.ugtm_core) createYMatrix() (in module ugtm.ugtm_core) createYMatrixInit() (in module ugtm.ugtm_core) crossvalidateGTC() (in module ugtm.ugtm_crossvalidate) crossvalidateGTR() (in module ugtm.ugtm_crossvalidate) crossvalidatePCAC() (in module ugtm.ugtm_crossvalidate) crossvalidatePCAR() (in module ugtm.ugtm_crossvalidate) crossvalidateSVC() (in module ugtm.ugtm_crossvalidate) crossvalidateSVCrbf() (in module ugtm.ugtm_crossvalidate) crossvalidateSVR() (in module ugtm.ugtm_crossvalidate)

E

eGTC (class in ugtm.ugtm_sklearn) eGTCnn (class in ugtm.ugtm_sklearn) eGTM (class in ugtm.ugtm_sklearn)

eGTR (class in ugtm.ugtm_sklearn) eIGTM (class in ugtm.ugtm_sklearn) evalBetaInv() (in module ugtm.ugtm_core) exp_normalize() (in module ugtm.ugtm_core)

F

fit() (ugtm.ugtm_sklearn.eGTC method) (ugtm.ugtm_sklearn.eGTCnn method) (ugtm.ugtm_sklearn.eGTM method) (ugtm.ugtm_sklearn.eGTR method) (ugtm.ugtm_sklearn.eIGTM method)

fit_transform() (ugtm.ugtm_sklearn.eGTM method) (ugtm.ugtm_sklearn.eIGTM method)

G

GTC() (in module ugtm.ugtm_predictions)

GTR() (in module ugtm.ugtm_predictions)

I

initBetaInvRandom() (in module ugtm.ugtm_core) InitialGTM (class in ugtm.ugtm_classes) initialize() (in module ugtm.ugtm_gtm)

initializeKernel() (in module ugtm.ugtm_kgtm) inverse_transform() (ugtm.ugtm_sklearn.eGTM method) (ugtm.ugtm_sklearn.eIGTM method)

K

KERNELcreateDistanceMatrix() (in module ugtm.ugtm_core)

L

landscape() (in module ugtm.ugtm_landscape)

M

meanPoint() (in module ugtm.ugtm_core) modePoint() (in module ugtm.ugtm_core) module ugtm, [1] ugtm.ugtm_classes, [1], [2] ugtm.ugtm_core ugtm.ugtm_crossvalidate, [1], [2] ugtm.ugtm_gtm, [1], [2] ugtm.ugtm_kgtm, [1], [2] ugtm.ugtm_landscape, [1], [2] ugtm.ugtm_predictions, [1], [2] ugtm.ugtm_preprocess, [1], [2] ugtm.ugtm_sklearn, [1], [2]

O

optimBetaInv() (in module ugtm.ugtm_core) optimize() (in module ugtm.ugtm_gtm) OptimizedGTM (class in ugtm.ugtm_classes)

optimizeKernel() (in module ugtm.ugtm_kgtm) optimLMatrix() (in module ugtm.ugtm_core) optimWMatrix() (in module ugtm.ugtm_core) optimWMatrixAcc() (in module ugtm.ugtm_core)

P

pcaPreprocess() (in module ugtm.ugtm_preprocess) predict() (ugtm.ugtm_sklearn.eGTC method) (ugtm.ugtm_sklearn.eGTCnn method) (ugtm.ugtm_sklearn.eGTR method) predictBayes() (in module ugtm.ugtm_predictions)

predictNN() (in module ugtm.ugtm_predictions) predictNNSimple() (in module ugtm.ugtm_predictions) printClassPredictions() (in module ugtm.ugtm_predictions) ProcessedTrainTest (class in ugtm.ugtm_preprocess) processTrainTest() (in module ugtm.ugtm_preprocess) projection() (in module ugtm.ugtm_gtm)

R

ReturnU (class in ugtm.ugtm_classes)

runGTM() (in module ugtm.ugtm_gtm) runkGTM() (in module ugtm.ugtm_kgtm)

S

set_inverse_transform_request() (ugtm.ugtm_sklearn.eGTM method) (ugtm.ugtm_sklearn.eIGTM method)

set_score_request() (ugtm.ugtm_sklearn.eGTC method) (ugtm.ugtm_sklearn.eGTCnn method) (ugtm.ugtm_sklearn.eGTR method)

T

transform() (in module ugtm.ugtm_gtm) (ugtm.ugtm_sklearn.eGTM method) (ugtm.ugtm_sklearn.eIGTM method)

transform_blocks() (ugtm.ugtm_sklearn.eIGTM method)

U

ugtm module, [1] ugtm.ugtm_classes module, [1], [2] ugtm.ugtm_core module ugtm.ugtm_crossvalidate module, [1], [2] ugtm.ugtm_gtm module, [1], [2]

ugtm.ugtm_kgtm module, [1], [2] ugtm.ugtm_landscape module, [1], [2] ugtm.ugtm_predictions module, [1], [2] ugtm.ugtm_preprocess module, [1], [2] ugtm.ugtm_sklearn module, [1], [2]

W

whichExperiment() (in module ugtm.ugtm_crossvalidate)

write() (ugtm.ugtm_classes.OptimizedGTM method) write_all() (ugtm.ugtm_classes.OptimizedGTM method)